Your tool should work fine.
When you turn on the ignition, let the bike go completely through its start initialization before you hit the start button - this will let the computer check and sync the stepper positions, which control idle balance. This good practice on every start.
I do not think there is any benefit to syncing as high as 4K rpm. You are trying to eliminate the difference in throttle opening. The percentage difference is larger when the throttle is nearly closed, but off idle. 2000 rpm is enough. If you have balance here, you will have balance at 4000.
I tend to adjust from the right side, but that is just because the right side of my 1200RT is easiest to access in my garage. (I think the right side has to be used on the 1100 & 1150 engines)
Your video shows out of sync one way at idle, the other way off idle. Letting the steppers sync on start should balance the idle. If not, one cable may be too tight, not allowing the throttle to close completely. Off idle the left side is higher, which you will correct yourself.
Thanks for the video. I've been using my old mercury balancer, which works fine, but the columns tend to bounce much more than your version. Might be time for a change.